PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG254600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 529aa    MW: 54349.4 Da    PI: 4.9228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG254600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11343385754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pavir.8KG254600.1.p 343 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 385
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-17339411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9342385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.93E-13343389No hitNo description
Gene3DG3DSA:4.10.280.103.3E-16343397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00612457498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MLPPFGNPLW TPDGCGAQQQ DAPPPTPMML GATQPLGHEP QQNLLSLAQA SADLRGGVFS  60
APPVVDDEWY FNSAAGAGAQ GSLLLAPPGE GAPGLLSLGA ASSQMFSLFN MGGGGAPYDL  120
HGFDLGLSGG GGGVTGGELV SFAGAGSVSN SAPLPLIPAG NAGFLGSFGG FGTAPTQMPE  180
FGGLGGFDMF NNGAGAGAGC SAPAPPASAS LAAPFSARGK AAVLRPLEIF PPVGVQPTLF  240
QKRALRRNAG EEDDDKKRKA EALAAAAGAS SAGGGDMVLE DADDDDGGSI DGSGLNYDSE  300
DARGVEESGK KDDKDSNANS TVTAGGAGDG KGKRKGMPAK NLMAERRRRK KLNDRLYMLR  360
SVVPKISKMD RASILGDAIE YLKELLQKIN DLQNELESPP STASLPPTPT SFHPLTPTLP  420
TLPSRVKEEL GTSALPSPTS QQPRVEVRMR EGRAVNIHMF CARRPGLLLN AMKAIEGLGL  480
DVQQAVASCF NGFTLDVFKA ELCKDGPGLL PEEIKTVLMQ STGFHGVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332350KRKGMPAKNLMAERRRRKK
2344351ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979362.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE21e-110ICE1_ARATH; Transcription factor ICE1
TrEMBLK3ZI100.0K3ZI10_SETIT; Uncharacterized protein
STRINGSi026212m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-84bHLH family protein